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Chemical Foundations of Life

#biochemistry#water#reference
1.0

Key points

In notes →
  1. 01

    Atomic number = protons; mass number = protons + neutrons.

  2. 02

    Protium, deuterium, tritium = hydrogen's isotopes, with 0, 1, 2 neutrons.

  3. 03

    Water: 18 daltons, bent at 104.5°, polar. CO₂: linear, symmetrical, nonpolar.

  4. 04

    Water's unusually high mp/bp/heat of vaporization/surface tension come from intermolecular hydrogen bonding.

  5. 05

    Hydrophilic = polar = water-soluble. Hydrophobic = nonpolar = water-insoluble. Amphipathic = both, in one molecule.

  6. 06

    High dielectric constant → weaker ionic attraction → water dissolves salts easily.

  7. 07

    Water is amphoteric (acts as acid or base) and amphiprotic (donates or accepts H⁺): H2O⇌H++OH−H_2O \rightleftharpoons H^+ + OH^-, and 2H2O⇌H3O++OH−2H_2O \rightleftharpoons H_3O^+ + OH^-. H3O+H_3O^+ → cathode, OH−OH^- → anode.

  8. 08

    Kw=[H+][OH−]=Keq×55.5=10−14K_w = [H^+][OH^-] = K_{eq} \times 55.5 = 10^{-14} mol²/L² at 25°C (Keq=1.8×10−16K_{eq} = 1.8 \times 10^{-16} mol/L; [H2O][H_2O] held constant at 55.555.5 mol/L).

  9. 09

    Pure water: [H+]=10−7[H^+] = 10^{-7} mol/L, neutral. Acidic: [H+]>10−7[H^+] > 10^{-7} M. Basic: [H+]<10−7[H^+] < 10^{-7} M.

  10. 10

    pH=−log⁡[H+]pH = -\log[H^+].

  11. 11

    Brønsted-Lowry: acid donates H⁺, base accepts H⁺. HCl+H2O⇌Cl−+H3O+HCl + H_2O \rightleftharpoons Cl^- + H_3O^+ — conjugate pairs HCl/Cl−HCl/Cl^- and H3O+/H2OH_3O^+/H_2O.

  12. 12

    Strong acids ionize completely; weak acids don't.

  13. 13

    Ka=[H+][A−]/[HA]K_a = [H^+][A^-]/[HA] — an acid's tendency to donate its proton; the equilibrium constant of HA⇌H++A−HA \rightleftharpoons H^+ + A^-.

  14. 14

    pKa=−log⁡KapK_a = -\log K_a. Larger KaK_a → lower pKapK_a → stronger acid. Strong acid (HClHCl): Ka∼107K_a \sim 10^7, pKa∼−7pK_a \sim -7. Weak acid (acetic acid): Ka=1.8×10−5K_a = 1.8 \times 10^{-5}, pKa=4.76pK_a = 4.76.

  15. 15

    Henderson-Hasselbalch: pH=pKa+log⁡([A−]/[HA])pH = pK_a + \log([A^-]/[HA]). When [A−]=[HA][A^-] = [HA], pH=pKapH = pK_a — the acid is 50% dissociated, the buffer's point of maximum capacity.

  16. 16

    Titration: titrant (known conc.) added to analyte (unknown conc.) until the reaction is complete. A weak acid is titrated with a strong base; the titration curve plots pH vs. OH−OH^- added.

  17. 17

    Equivalence point = inflection point (steepest slope): moles titrant added = moles acid originally present. Half-equivalence point ([HA]=[A−][HA]=[A^-], pH=pKapH=pK_a) sits in the flat buffering zone instead — the two are easily confused but are opposite points on the curve.

  18. 18

    Curve order (weak acid + strong base, as OH−OH^- is added): start (low pH) → early rise → buffering zone begins → half-equivalence (pH=pKapH=pK_a) → buffering zone ends → equivalence/inflection point (pH>7pH>7, endpoint detected here) → past equivalence, pH levels off.

  19. 19

    Mirror case: weak base + strong acid (NH3NH_3 + HClHCl) — curve falls instead of rises; equivalence-point pH is <7< 7 (conjugate acid NH4+NH_4^+ hydrolyzes) instead of >7> 7.

  20. 20

    Buffer = resists pH change on adding acid/base or on dilution. Acidic buffer (weak acid + conjugate base), pH<7pH<7; basic buffer (weak base + conjugate acid), pH>7pH>7. Physiological examples: phosphate buffer (H2PO4−/HPO42−H_2PO_4^-/HPO_4^{2-}), bicarbonate buffer (H2CO3/HCO3−H_2CO_3/HCO_3^- — blood's main buffer, tunable by lungs and kidneys).

  21. 21

    Buffer range/capacity depend on the conjugate pair's pKapK_a and on their concentrations. Requires a weak acid + its salt, at reasonably similar concentrations — works via the common ion effect (excess A−A^- from the salt suppresses the acid's own ionization).

  22. 22

    Acetic acid/sodium acetate buffer: CH3COO−CH_3COO^- (from the fully dissociated salt) mops up added H+H^+; CH3COOHCH_3COOH mops up added OH−OH^-; dilution leaves the [A−]/[HA][A^-]/[HA] ratio — and so the pH — unchanged.

22 points